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yxnA [2018-07-26 12:26:35]
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yxnA [2018-07-26 12:26:35]

general stress protein, similar to glucose 1-dehydrogenase, survival of ethanol stress
locus
BSU40000
pI
9.31
mw
39.20 kDa
protein length
356 aa Sequence Blast
gene length
1068 bp Sequence Blast
function
survival of ethanol stress
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.1|General stress proteins (controlled by SigB)]
  • [category|SW 6|Groups of genes] → [category|SW 6.6|Poorly characterized/ putative enzymes]

    • Gene

    Coordinates
    4,108,058 → 4,109,128

    The protein

    Paralogous protein(s)

  • [protein|0927C7D45721F47F5ED2646CAAC324A308FD7724|YqjQ]:

    • Structure

  • [PDB|4NBU] (FabQ from Bacillus sp., corresponds to aa 26 ... 255 of YxnA, 32% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|18698DA427051097DEEE63F45F3429B8617B1F48|yxnA]
    description
    [Pubmed|10746760]

    sigma factors

  • [protein|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB]: sigma factor, [Pubmed|15805528], in [regulon|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB regulon]

    • regulation

  • induced by stress ([protein|search|SigB]) [Pubmed|15805528]
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    Biological materials

    Mutant

  • MGNA-B762 (yxnA::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1761 NBRP B. subtilis, Japan]
  • BKE40000 (Δ[gene|18698DA427051097DEEE63F45F3429B8617B1F48|yxnA]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE40000 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGAGAGATCCCTCCTAG, downstream forward: _UP4_TAATCTCTGACCATAAGAAA
  • BKK40000 (Δ[gene|18698DA427051097DEEE63F45F3429B8617B1F48|yxnA]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK40000 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGAGAGATCCCTCCTAG, downstream forward: _UP4_TAATCTCTGACCATAAGAAA

    • References

  • 15805528,10746760